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Research - CZ Biohub

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CZ Biohub is a Chan Zuckerberg Initiative research institute; this page is tangentially relevant to AI safety as a showcase of advancing biological AI capabilities, including LLM scientific reasoning and virtual cell models.

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Summary

The Chan Zuckerberg Biohub research page aggregates publications from its teams and partners, covering cutting-edge work in AI-driven biology including foundation models for single-cell transcriptomics, virtual cell construction, and biological reasoning in LLMs. The organization promotes open science through preprints and has supported over 8,000 publications since 2015. Recent work includes AI models for cellular regulation, cross-species generative cell atlases, and guidance methods for diffusion models.

Key Points

  • Hosts publications spanning AI/ML applied to biology: foundation models (GREmLN, TranscriptFormer), virtual cell AI, and scientific reasoning LLMs
  • Includes 'How to build the virtual cell with artificial intelligence' (Cell, 2024) — a priority roadmap for AI-driven biology
  • Features rbio1, a project training LLMs with biological world models as soft verifiers for scientific reasoning
  • Promotes open-access science via preprint deposition; 8,000+ publications supported since 2015
  • Relevant to AI capabilities research: demonstrates rapid advancement of biological AI foundation models and generative approaches

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Chan Zuckerberg InitiativeOrganization50.0

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Scientific research publications - Biohub 
 
 

 

 
 

 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 

 
 
 
 Research

 We believe in sharing the research findings of our teams and partners openly to accelerate understanding of human health and disease. We strongly encourage researchers to deposit manuscripts as preprints before peer review to increase access to research findings and to communicate results more quickly. Since 2015, we have supported more than 8,000 publications.

 

 

 
 
 
 
 
 
 
 
 
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 March 11, 2026 
 
 
 
 
 Amino acid supplementation enhances in vivo efficacy of lipid nanoparticle-mediated mRNA delivery in preclinical models 

 

 
 
 Kangfu Chen, Wenhan Wang, Amber Lennon, et al. (2026) | Science Translational Medicine 

 
 

 
 
 
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 March 5, 2026 
 
 
 
 
 Tissue-specific clonal selection and differentiation of CD4⁺ T cells during infection 

 

 
 
 Roham Parsa, Arpita Sushil (2026) | Nature Immunology 

 
 

 
 
 
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 February 28, 2026 
 
 
 
 
 AI-Guided CRISPR Screen Accelerates Discovery of New Drug Targets 

 

 
 
 Mushaine Shih, Amber Lennon, Jason Perera, et al. (2026) | bioRxiv 

 
 

 
 
 
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 February 9, 2026 
 
 
 
 
 Virtual Cells Need Context, Not Just Scale 

 

 
 
 Payam Dibaeinia, Sudarshan Babu, Mei Knudson, et al. (2026) | bioRxiv 

 
 

 
 
 
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 February 9, 2026 
 
 
 
 
 DecoderTCR: Compositional Pretraining and Entropy-Guided Decoding for TCR-pMHC Interactions 

 

 
 
 Ben Lai, Melissa Englund, Ramit Bharanikumar, et al. (2026) | bioRxiv 

 
 

 
 
 
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 November 4, 2025 
 
 
 
 
 Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models 

 

 
 
 Giovanni Palla, Sudarshan Babu, Payam Dibaeinia, et al. (2025) | arXiv 

 
 

 
 
 
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 November 2, 2025 
 
 
 
 
 VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations and regulatory landscapes for personalized gene expression prediction 

 

 
 
 Sayan Ghosal, Youssef Barhomi, Tejaswini Ganapathi, et al. (2025) | bioRxiv 

 
 

 
 
 
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 October 10, 2025 
 
 
 
 
 A path towards AI-scale, interoperable biological data 

 

 
 
 Brian Aevermann, Andrea Califano, Chi-Li Chiu, et al. (2025) | arXiv 

 
 

 
 
 
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 August 28, 2025 
 
 
 
 
 Tissue-specific clonal selection and differentiation of CD4⁺ T cells during infection 

 

 
 
 Roham Parsa, Helder Assis, Tiago B.R. de Castro, et al. (2025) | bioRxiv 

 
 

 
 
 
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